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Running Bioinformatic Analyses
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How-to guides for performing bioinformatic anaylses with Nextstrain. 

.. toctree::
   :maxdepth: 2
   :titlesonly:
   :caption: Table of contents

   filtering-and-subsampling
   augur_snakemake
   missing-sequence-data
   translate_ref
   root-and-ref-seqs
   import-beast
   defining-clades
   colors
   lat_longs
   vcf_input
   fasta_input
   seq_traits
   examples